2014
Xinlu Guo, Jun
Wang, Jian Zhang & Wei Wang
Conformational phase diagram for
proteins absorbed on ultra-small
nanoparticles studied by a
structure-based coarse-grained model
Molecular Simulation,
DOI:10.1080/08927022.2014.964234
Yunqiang Bian,
Jian Zhang, Jun Wang & Wei Wang
On the accuracy of metadynamics and its
variations in a protein folding process
Molecular Simulation, DOI:
10.1080/08927022.2014.931680
QingHe Zhang,
Xiaojun Tian,
Feng Liu &
Wei Wang
A switch-like
dynamic mechanism for the initiation of
replicative senescence
FEBS
Lett.
588, 4369-4374 (2014)
Chunmei Lv, Xiang
Gao, Wenfei Li, Bo Xue, Meng Qin, Leslie
D. Burtnick, Hao Zhou, Yi Cao, Robert C.
Robinson & Wei Wang
Single-molecule force spectroscopy
reveals force-enhanced binding of
calcium ions by gelsolin
Nature Communications 5, 4623
(2014)
Wenfei Li, Wei
Wang, and Shoji Takada
Energy Landscape
Views for Interplays among Folding,
Binding, and Allostery of Calmodulin
Domains
Proceedings of
the National Academy of Sciences of the
United States of America 111, no. 29
(2014): 10550-10555
Bian, Yunqiang, Cheng Tan, Jun Wang,
Yuebiao Sheng, Jian Zhang, and Wei Wang
Atomistic Picture
for the Folding Pathway of a Hybrid-1
Type Human Telomeric DNA G-Quadruplex
Plos
Computational Biology 10, no. 4
(2014)
Xue, Bin, Ying Li, Fan Yang, Chunfeng
Zhang, Meng Qin, Yi Cao, and Wei Wang
An Integrated
Artificial Photosynthesis System Based
on Peptide Nanotubes
Nanoscale 6,
no. 14 (2014): 7832-7837
Zhang, Xiao-Peng, Feng Liu, and Wei Wang
Interplay between
Mdm2 and Hipk2 in the DNA Damage
Response
Journal of
the Royal Society Interface 11, no.
96 (2014)
Zhou, Chun-Hong, Xiao-Peng Zhang, Feng
Liu, and Wei Wang
Involvement of
Mir-605 and Mir-34a in the DNA Damage
Response Promotes Apoptosis Induction
Biophysical
Journal 106, no. 8 (2014): 1792-1800
Wang, Yaolai, Feng Liu, Jun Li, and Wei
Wang
Reconciling the
Concurrent Fast and Slow Cycling of
Proteins on Gene Promoters
Journal of the
Royal Society Interface 11, no. 96
(2014)
Li, Ying, Meng Qin, Yi Cao, and Wei Wang
Designing the
Mechanical Properties of Peptide-Based
Supramolecular Hydrogels for Biomedical
Applications
Science
China-Physics Mechanics & Astronomy
57, no. 5 (2014): 849-858
Li, Yiran, Meng Qin, Ying Li, Yi Cao,
and Wei Wang
Single Molecule
Evidence for the Adaptive Binding of
Dopa to Different Wet Surfaces
Langmuir 30,
no. 15 (2014): 4358-4366
Liang, Junyi, Lele Guo, Yin Ding, Lei
Xia, Yan Shen, Meng Qin, Qiang Xu, Yi
Cao, and Wei Wang
Genetically Encoded
Red Fluorescent Copper(I) Sensors for
Cellular Copper(I) Imaging
Biochem Biophys
Res Commun 443, no. 3 (2014):
894-898
2013
Cao Yi
A
Single-Molecule View on the Disassembly
of Tobacco Mosaic Virus
Biophysical
Journal 105 (2013): 2615-2616
Liang, Junyi, Yang Yang, Puguang Yin,
Yin Ding, Yan Shen, Meng Qin, Jun Wang,
Qiang Xu, Yi Cao, and Wei Wang
A Yellow
Fluorescent Protein with Reduced
Chloride Sensitivity Engineered by
Loop-Insertion
Chembiochem
14, no. 12 (2013):
1423-1426
Liu, Chao, Wenfei Li, and Wei Wang
Correlation of
Reorientational Jumps of Water Molecules
in Bulk Water
Physical Review E
87, no. 5 (2013)
Lv, Chunmei, Dawei Zou, Meng Qin, Wei
Meng, Yi Cao, and Wei Wang
Hydrodynamic Force
Depends Not Only on the Viscosity of
Solution but Also on the Molecular
Weights of Viscogens
Langmuir 29,
no. 34 (2013): 10624-10629
Meng, Wei, Hai Pan, Meng Qin, Yi Cao,
and Wei Wang
Osmolyte Effects on
the Unfolding Pathway of
Beta-Lactoglobulin
Chinese Physics
Letters 30, no. 10 (2013)
Tan, Cheng, Wenfei Li, and Wei Wang
Localized
Frustration and Binding-Induced
Conformational Change in Recognition of
5s Rna by Tfiiia Zinc Finger
Journal of
Physical Chemistry
B 117, no. 50
(2013): 15917-15925
Tan, Cheng, Wenfei Li, and Wei Wang
Specific Binding of
a Short Mirna Sequence by Zinc Knuckles
of Lin28: A Molecular Dynamics
Simulation Study
Journal of
Theoretical & Computational Chemistry
12, no. 8 (2013)
Xie, Jinbing, Yi Cao, Mao Xia, Xiang
Gao, Meng Qin, Jiwu Wei, and Wei Wang
One-Step Photo
Synthesis of Protein-Drug Nanoassemblies
for Drug Delivery
Advanced
Healthcare Materials 2, no. 6
(2013): 795-799
Xie, Jinbing, Ying Li, Yi Cao, Chun Xu,
Mao Xia, Meng Qin, Jiwu Wei, and Wei
Wang
Photo Synthesis of
Protein-Based Drug-Delivery
Nanoparticles for Active Tumor Targeting
Biomaterials
Science 1, no. 12 (2013): 1216-1222
Ding, Baiyong, Ying Li, Meng Qin, Yin
Ding, Yi Cao, and Wei Wang
Two Approaches for
the Engineering of Homogeneous
Small-Molecule Hydrogels
Soft Matter
9, no. 18 (2013): 4672-4680
Ding, Yin, Ying Li, Meng Qin, Yi Cao,
and Wei Wang
Photo-Cross-Linking
Approach to Engineering Small
Tyrosine-Containing Peptide Hydrogels
with Enhanced Mechanical Stability
Langmuir 29,
no. 43 (2013): 13299-13306
Li, Ying, Yin Ding, Meng Qin, Yi Cao,
and Wei Wang
An Enzyme-Assisted
Nanoparticle Crosslinking Approach to
Enhance the Mechanical Strength of
Peptide-Based Supramolecular Hydrogels
Chemical
Communications 49, no. 77 (2013):
8653-8655
2012
Hai Pan, Meng Qin,
Wei Meng, Yi Cao, and Wei Wang
How Do Proteins Unfold upon Adsorption
on Nanoparticle Surfaces?
Langmuir, DOI: 10.1021/la302258k,
(2012)
Xiaotian Han, Meng
Qin, Hai Pan, Yi Cao, and Wei Wang
A versatile “multiple fishhooks”
approach for the study of
ligand–receptor interactions using
single-molecule atomic force microscopy
Langmuir, 28 (2012)10020
Wenfei Li,
Tsuyoshi Terakawa, Wei Wang and Shoji
Takada
Energy landscape and multiroute folding
of topologically complex proteins
adenylate kinase and 2out-knot
Proc. Natl. Acad. Sci. U. S. A.
109 (2012) 17789
Wenhui Xi, Wenfei
Li, and Wei Wang
Template Induced Conformational Change
of Amyloid-β Monomer
J. Phys. Chem. B, 116 (2012) 7398–7405
Wenhui Xi, Wenfei
Li, and Wei Wang
Modulation of amyloid-β conformation by
charge state of N-terminal disordered
region
CHIN. PHYS. LETT. 29 (2012)088702
Junyi Liang, Meng Qin, Rui Xu, Xiang Gao, Yan
Shen, Qiang Xu, Yi Cao and Wei Wang
A genetically encoded copper(I) sensor
based on engineered structural
distortion of EGFPw
Chem. Commun. 48 (2012) 3890
Chunmei
Lv, Cheng Tan, Meng Qin, Dawei Zou, Yi
Cao, and Wei Wang
Low Folding Cooperativity of Hp35
Revealed by Single-Molecule Force
Spectroscopy and Molecular Dynamics
Simulation
Biophys. J. 102 (2012) 1944
Xiang
Gao, Meng Qin, Puguang Yin, Junyi Liang,
Jun Wang, Yi Cao, and Wei Wang
Single-Molecule Experiments Reveal the
Flexibility of a Per-ARNT-Sim Domain and
the Kinetic Partitioning in the
Unfolding Pathway under Force
Biophys. J. 102 (2012) 2149
Yaolai Wang, Feng Liu and Wei Wang
Dynamic Mechanism for the Transcription
Apparatus Orchestrating Reliable
Responses to Activators
Sci. Rep. 2 (2012) srep00422
Xiao-Jun Tian,
Feng Liu, Xiao-Peng Zhang, Jun Li, Wei
Wang
A Two-Step
Mechanism for Cell Fate Decision by
Coordination of Nuclear and
Mitochondrial p53 Activities
PLoS ONE
7 (2012) e38164.
Xiao-Peng Zhang, Feng Liu, and Wei Wang
Regulation of the DNA Damage Response by
p53 Cofactors
Biophys. J. 102 (2012) 2251
Jian Zhang,
Yunqiang Bian, Hui Lin and Wei Wang
RNA fragment
modeling with a nucleobase
discrete-state model
Phys.Rev.E 85
(2012) 021909
2011
Xinlu Guo, Jian
Zhang, Le Chang, Jun Wang, and Wei Wang
Effectiveness of Φ-value analysis in the
binding process of Arc repressor dimer
PHYSICAL REVIEW E, 84, 011909
(2011)
Pan Hai, Xie
Jin-Bing, Cao Yi, Qin Meng, and Wang Wei
Effects of Labeling Thiophilic FRET Dyes
on the Stability and Dimerization
Process of β-Lactoglobulin
CHIN. PHYS. LETT. 28 (2011)
118702
Wenfei Li, Meng
Qin, Zuoxiu Tie, and Wei Wang
Effects of solvents on the intrinsic
propensity of peptide backbone
conformations
Phys.Rev.E 84(2011)041933
Jinbing Xie, Meng
Qin, Yi Cao, and Wei Wang
Mechanistic insight of photo-induced
aggregation of chicken egg white
lysozyme: The interplay between
hydrophobic interactions and formation
of intermolecular disulfide bonds
Proteins 79(2011)2505–2516.
Dawei Zou, Yi Cao,
Meng Qin, Weimin Dai and Wei Wang
Formation of alpha-helix-based twisted
ribbon-like fibrils from
ionic-complementary peptidesw
Chem. Commun. 47(2011)7413–7415
Wenfei Li,Peter G.
Wolynes,and Shoji Takada
Frustration, specific sequence
dependence, and nonlinearity in
large-amplitude fluctuations of
allosteric proteins
Proc. Natl. Acad. Sci. U. S. A.
108(2011) 3504–3509
Yujie Zhang, Jian
Zhang,and Wei Wang
Atomistic Analysis of Pseudoknotted RNA
Unfolding
J. Am. Chem. Soc.
133(2011)6882–6885
TIE Zuo-Xiu, QIN
Meng, ZOU Da-Wei, CAO Yi, WANG Wei
Photo-Crosslinking Induced Geometric
Restriction Controls the Self-Assembly
of Diphenylalanine Based Peptides
CHIN. PHYS. LETT. 28(2011)
028702
Xiao-Peng Zhang,
Feng Liu, and Wei Wang
Two-phase dynamics of p53 in the DNA
damage response
Proc. Natl. Acad. Sci. U. S. A.
(2011)8990-8995
Dawei Zou, Yi Cao,
Meng Qin, Weimin Dai and Wei Wang
Formation of a-helix-based twisted
ribbon-like fibrils from
ionic-complementary peptidesw
Chem. Commun. (2011) DOI:
10.1039/c1cc12001h
2010
Tian Pu, Xiao-Peng Zhang, Feng Liu,and
Wei Wang
Coordination of the Nuclear and
Cytoplasmic Activities of p53 in
Response to DNA Damage
Biophys. J. 99
(2010)1696–1705
Le Chang, Jun Wang, and Wei Wang
Composition-based effective chain length
for prediction of protein folding rates
Physical Review E 82 (2010)051930
Yuebiao Sheng,Wei Wang, P. Chen
Adsorption of an Ionic Complementary
Peptide on the Hydrophobic Graphite
Surface
Journal of Physical Chemistry C
114 (2010) 454-459.
Yuebiao Sheng,Wei Wang, P. Chen
Interaction of an ionic complementary
peptide with a hydrophobic graphite
surface
Protein Science 19 (2010)
1639-1648.
Li Sun, Jun Wang, Wei Wang
Dissection of the Zipping-and-Assembly
Mechanism for Folding of Model Proteins
CHIN. PHYS. LETT. 27(2010) 038702
Zhiqiang Yan, Jun Wang,Jian Zhang, Meng
Qin, and Wei Wang
Structural selection of
ionic-complementary peptides with
electrostatic interactions
Physical Review E 82 (2010)031917
Zhiqiang Yan, Z. Q., J. Wang, et al.
(2010).
Nucleation process in the folding of a
domain-swapped dimer
Physical Review E 81(2010)021910
Jian Zhang, Yu-Jie Zhang , Wei Wang
An RNA Base Discrete State Model toward
Tertiary Structure Prediction
CHIN. PHYS. LETT. 27 (2010)118702
Xiao-peng Zhang, Feng Liu, Wei Wang
Coordination between Cell Cycle
Progression and Cell Fate Decision by
the p53 and E2F1 Pathways in Response to
DNA Damage
Journal of Biological Chemistry
285 (2010)31571-31580.
Dawei Zou,Zuoxiu Tie,Chunmei Lu,Meng
Qin,Xiaomei Lu,Mu Wang,Wei Wang, P. Chen
Effects of Hydrophobicity and Anions on
Self-Assembly of the Peptide EMK16-II
Biopolymers 93(2010)318-329
Guanghong Zuo, Wenfei Li,Jian Zhang,Jin
Wang, Wei Wang
Folding of a Small RNA Hairpin Based on
Simulation with Replica Exchange
Molecular Dynamics
Journal of Physical Chemistry B
114 (2010)5835-5839
Guanghong Zuo, Jun Wang, Meng Qin, Bin
Xue, Wei Wang
Effect of solvation-related interaction
on the low-temperature dynamics of
proteins
Physical Review E 81(2010)031917
2009
JIAN ZHANG, JOSEPH
DUNDAS, MING LIN, RONG CHEN, WEI WANG,
and JIE LIANG
Prediction of geometrically feasible
three-dimensional structures of
pseudoknotted RNA through free energy
estimation
RNA, 15, 2248–2263(2009)
Wei Wang, Wei-Xin Xu, Yaakov Levy, E.
Trizac, and P. G. Wolynes
Confinement effects on the kinetics and
thermodynamics of protein dimerization
Proc. Natl. Acad. Sci. U. S. A.
106(2009)5517–5522
Xiaopeng Zhang, Feng Liu, Zhang Cheng
and Wei Wang
Cell fate decision mediated by p53
pulses
Proc. Natl. Acad. Sci. U. S. A.
106(2009)12245-12250
Jie Li, Feng Liu, Ding Xu, Wei Wang
Signal propagation through feedforward
neuronal networks with different
operational modes
EPL 85 (2009) 38006
Xiaojun Tian, Xiaopeng Zhang, Feng Liu
and Wei Wang
Interlinking positive and negative
feedback loops creates a tunable motif
in gene regulatory networks.
Phys.Rev.E (2009)
80,011926:1-8.
Lei Wu, Wenfei Li, Feng Liu, Jian Zhang,
Jun Wang, Wei Wang
Understanding protein folding
cooperativity based on topological
consideration
JOURNAL OF CHEMICAL PHYSICS 131
(2009) 065105
Zhang Cheng, Feng Liu, Xiao-Peng Zhang,
and Wei Wang
Reversible Phosphorylation Subserves
Robust Circadian Rhythms by Creating a
Switch in Inactivating the Positive
Element
Biophysical Journal 97 (2009)
2867–2875
Jie Li, Wan-Qing Yu, Ding Xu,Feng Liu,
Wei Wang
Mechanism for propagation of rate
signals through a 10-layer feedforward
neuronal network
CHINESE PHYSICS B 18 (2009)
5560-5565
Dawei Zou, Zuoxiu Tie, Meng Qin M, Wei
Wang
Effect of Phosphate on the Self-Assembly
of Peptide EMK16-II
CHINESE PHYSICS LETTERS 26 (2009)
088103
Jian Zhang, Wenfei Li, Jun Wang, Meng
Qin, Lei Wu, Zhiqiang Yan,Weixin Xu,
Guanghong Zuo, Wei Wang
Protein Folding Simulations: From
Coarse-Grained Model to All-Atom Model
IUBMB LIFE 61 (2009) 627-643
2008
Wenfei Li, Jian Zhang, Jun Wang and Wei
Wang
Metal-Coupled Folding of Cys2His2
Zinc-Finger
J. Am. Chem. Soc. 130 (2008)
892-900
Jian Zhang, Wenfei Li, Jun Wang, Meng
Qin and Wei Wang
All-atom replica exchange molecular
simulation of protein BBL
Proteins 72 (2008) 1038-1047
Lei Wu, Jian Zhang, Meng Qin, Feng Liu
and Wei Wang
Folding of proteins with an all-atom Gō-model
J. Chem. Phys. 128 (2008) 235103
Lingzhi Wu, Baoliang Ma, Yuebiao Sheng
and Wei Wang
Equilibrium and kinetic analysis on the
folding of hen egg lysozyme in the
aqueous-glycerol solution
J. Mol. Struct. 891 (2008)
167-172
Jie Li, Jun Wang and Wei Wang
Identifying folding nucleus based on
residue contact networks of proteins
Proteins 71 (2008) 1899-1907
Zhiqiang Yan, Jun Wang and Wei Wang
Folding and dimerization of the ionic
peptide EAK16-IV
Proteins 72 (2008) 15-162
Jian Zhang, Ming Lin, Rong Chen, Wei
Wang and Jie Liang
Discrete state model and accurate
estimation of loop entropy of RNA
secondary structures
J. Chem. Phys. 128 (2008) 125107
Lingzhi Wu, Yuebiao
Sheng, Jinbing Xie and Wei Wang
Photoexcitation of tryptophan groups
induced reduction of disulfide bonds in
hen egg white lysozyme
J. Mol. Struct. 882 (2008)
101-106
Lingzhi Wu, Baoliang Ma, Dawei Zou and
Wei Wang
Influence of metal ions on folding
pathway and conformational stability of
bovine serum albumin
J. Mol. Struct. 877 (2008) 44-49
Yu Su, Wenfei Li,
Jian Zhang and Wei Wang
An improved method of potential of mean
force for protein-protein interactions
Chin. Sci. Bull. 53 (2008)
1145-1151
Feng Liu and Xiaojing Wang
A Common Cortical Circuit Mechanism for
Perceptual Categorical Discrimination
and Veridical Judgment
PLoS Computational Biology 4
(2008) e1000253
Zhang Cheng, Feng Liu, Xiaopeng Zhang
and Wei Wang
Robustness analysis of cellular memory
in an autoactivating positive feedback
system
FEBS Letters 582 (2008) 3776–3782
2007
Wenfei Li, Jiang Zhang and Wei Wang
Understanding the Folding and Stability
of a Zinc Finger Based Full Sequence
Design Protein with Replica Exchange
Molecular Dynamics Simulations
Proteins 67 (2007) 338-349
Lei Wu, Jian Zhang, Jun Wang, Wenfei Li
and Wei Wang
Folding behavior of ribosomal protein S6
studied by modified modified G(o)over-bar-like
model
Phys. Rev. E 75 (2007) 031914
Wenfei Li, Jian Zhang, Yu Su, Jun Wang,
Meng Qin and Wei Wang
Effects of Zinc Binding on the
Conformational Distribution of the
Amyloid-a Peptide Based on Molecular
Dynamics Simulations
J. Phys. Chem. B 111 (2007)
13814-13821
Jing Li and Wei Wang
Grouping of amino acids and recognition
of protein structurally conserved
regions by reduced alphabets of amino
acids
Sci China Ser C - Life Sci. 50
(2007) 3, 392-402
Xiaopeng Zhang, Zhang Cheng, Feng Liu
and Wei Wang
Linking fast and slow positive feedback
loops creates an optimal bistable switch
in cell signaling
Phys. Rev. E 76 (2007) 031924
Y.Chen, Jun Wang and Wang W
The preferences of orientations between
the pairs of amino acids
Chin. Phys. 16 (2007) 868-875
2006
Yuebiao Sheng and Wei Wang
Comparative all-atomic study of
unfolding pathways for proteins CI2 and
barnase
Phys. Rev. E 73 (2006) 021915
Meng Qin, Jian Zhang and Wei Wang
Effects of Disulfide Bonds on Folding
Behavior and Mechanism of beta- Sheet
Protein Tendamistat
Biophys. J. 90 (2006) 272-286
Guanghong Zuo, Jun Wang and Wei Wang
Folding with downhill behavior and low
cooperativity of proteins
Proteins 63 (2006) 165-173
Jian Zhang, Meng Qin and Wei Wang
Folding mechanism of beta-hairpins
studied by replica exchange molecular
simulations
Proteins 62 (2006) 672-685
Sentao Wang, Wei Wang and Feng Liu
Propagation of firing rate in a
feed-forward neuronal network
Phys. Rev. Lett. 96 (2006) 018103
Baoliang Ma, Zuoxiu Tie, Dawei Zou, Jing
Li and Wei Wang
Urea- and thermal- induced unfolding of
boving serum albumin
Mod. Phys. Lett. B 20 (2006)
1909-1916
Xinsheng Liu, Jing Li, Wanlin Guo and
Wei Wang
A new method for quantifying residue
conservation and its applications to the
protein folding nucleus
Biochem. Biophys. Res. Commun.
351 (2006) 1031-1036
李 菁， 王 炜
氨基酸残基归类及用简化后的字符识别蛋白质结构保守区域
中国科学 C 辑 生命科学 36 (6) 552-562
Jing Li, Fengbo Li and Wei Wang
Simplification of protein sequence and
alignment-free sequence analysis
Prog. Biochem. Biophy. 33 (2006)
1215-1222
Jing Li and Wei
Wang
Detailed assessment of homology
detection using different substitution
matrices
Chin. Sci. Bull. 51 (2006) 1538
H. Yang, M.
Pritzker, S.Y. Fung, Y. Sheng, W. Wang
and P. Chen
Anion Effect on the Nanostructure of a
Metal Ion Binding Self-Assembling
Peptide
Langmuir 22 (2006) 8553-8562
Y Chen, Jun Wang, Bing Xue, Wei Wang
The orientational preferences of
backbones of proteins
Chin. Sci. Bull. 51 (2006)
2559-2565
2005
Weixin Xu, Jun Wang and Wei Wang
Folding behavior of Chaperonin-Mediated
Substrate Protein
Proteins 61 (2005) 777-794
Jing Li, Jun Wang and Wei Wang
Size dependent complexity of sequences
in protein families
Europhys. J. B. 47 (2005) 431-436
Jian Zhang, Meng Qin and Wei Wang
Multiple Folding Mechanisms of Protein
Ubiquitin
Proteins 59 (2005) 565
Sentao Wang and Wei Wang
Transmission of neural activity in a
feedforward network
NeuroReport 16 (2005) 807-811
Weixin Xu, Jun Wang
and Wei Wang,
Protein Folding in Nano-sized Cylinders
Chin. Phys. Lett. 22 (2005)
258-261
Bing Xue, Yu Su and
Wei Wang
Permeation of particle through a
4-helix-bundle model channel
J. Chem. Phys. 122 (2005) 104703
Guanghong Zuo, Jian
Zhang, Jun Wang and Wei Wang
Folding behaviour for proteins BBL and
E3BD with Go-like models
Chin. Phys.Lett. 22 (2005)
1809-1812
Yuebiao
Sheng, Jing Li, Baoliang Ma and Wei Wang
Functional structures and folding
dynamics of two peptides
Chin. Phys. 14 (2005) 2365-2369
Jing Li, Jun Wang
and Wei Wang
Scaling behaviour of conserved sites in
protein families
Chin. Phys. Lett. 22 (2005)
1274-1277
Bing Xue and Wei Wang
Influence of external vibration on
tether chain in ligand-receptor binding
J. Chem. Phys. 122 (2005) 194912
2004
Jie Chen, Jun Wang and Wei Wang
Transition states for folding of
circular-permuted proteins
Proteins 57 (2004) 153-171
XS Liu, Ke Fan and Wei Wang
The Number of Protein Folds and Their
Distribution over Families in Nature
Proteins 54 (2004) 491-499
Jing Li, Jun Wang, Jian Zhang and Wei
Wang
Thermodynamic stability and kinetic
foldability of a lattice protein model
J. Chem. Phys. 120 (2004)
6274-6287
Yuguo Yu, Feng Liu, Wei Wang and
Tai-sing Lee
Optimal synchrony state fore maximal
information transmission
NeuroReport 15 (2004) 1605-1610
Sentao Wang, Feng Liu, Wei Wang and
Yuguo Yu
Impact of spatially correlated noise on
neuronal firing
Phys. Rev. E 69 (2004) 011909
Gaofeng Ji, Bin Xue, and Wei Wang,
Folding of lattice protein model chains
with fixed ends
Chin. Phys. 13 (2004) 1574-1581
Bin Xue, Jun Wang and Wei Wang
The `folding' behaviors of homopolymers
with one end fixed
J. Mod. Phys. B 18 (2004)
2123-2139
Sentao Wang, Jian Xu, Feng Liu and Wei
Wang
Improvement of signal transmission
through spike-timing-dependent
plasticity in neuronal network
Eur. Phys. J. B. 39 (2004)
351-356
2003
Ke Fan and Wei Wang
What is the minimum number of letters
required to fold a protein?
J. Mol. Biol. 328 (2003) 921
Jun Wang and Wei Wang
Folding transition of model protein
chains characterized by partition
function zeros
J. Chem. Phys. 118 (2003)
2952-2963
Meng Qin, Jun Wang, Y Tang and Wei Wang
Folding behaviors of lattice model
proteins with three kinds of contact
potentials
Phys. Rev. E 67 (2003) 061905
TP Li, Jun Wang, Ke Fan and Wei Wang
How simple can the proteins be: from the
prediction of the classes of protein
structures
Mod. Phys. Lett. B
17 (2003) 1-8
Feng Liu, Jianfeng Feng and Wei Wang
Impact of Poisson synaptic inputs with a
changing rate on weak-signal processing
Europhys. Lett. 64 (2003) 131-136
Yuguo Yu, Feng Liu, and Wei Wang
Synchronized Rhythmic Oscillation in a
noisy neural network
J. Phys. Soc. Jpn 72 (2003) 3291.
Meng Qin, Jun Wang and Wei Wang
Conservation of hydrophobic and
hydrophilic residues in four-helix
bundle
Chin. Phys. Lett. 20 (2003)
1883-1886
Bin Xue, Jun Wang and Wei Wang,
Collapse of homopolymer chains with two
fixed terminals
J. Chem. Phys. 119 (2003) 7534
Tangping Li, Ke Fan, Jun Wang and Wei
Wang
Reduction of protein sequence complexity
by residue grouping
Protein Eng. 16 (2003) 323
Longhua Hu, Jun Wang and Wei Wang
Folding simulations for a three-helix
bundle protein
Inter. J. Mod. Phys. B 17 (2003)
49-54
2002
Jun Wang and Wei Wang
Grouping of residues based on their
contact interactions
Phys. Rev. E 65 (2002) 041911
Ke Fan, Jun Wang and Wei Wang
Folding of lattice protein chains with
modified G(o)over-bar potential
Eur. Phys. B 30 (2002) 381-391
Yi Tang and Wei Wang,
Temporal evolution of the bright soliton
in an optical fiber
Europhys. Lett. 58 (2002) 188
Guoce
Zhuang, Jun Wang, Yi Shi Y, and Wei Wang
Phase synchronization and its cluster
feature in two-dimensional coupled map
lattices
Phys. Rev. E 66 (2002) 046201
Meng Qin, Jun Wang, Tanping Li and Wei
Wang,
Sequence design and folding dynamics of
lattice protein-like model
Inter. J. Mod. Phys. B 16 (2002)
631
Jun Wang, Ke Fan and Wei Wang,
Kinetic transition in model proteins
with a denatured native spinodal
Phys. Rev. E 65 (2002) 041925
2001
Ke Fan, Jun Wang and Wei Wang
Modeling two-state cooperativity in
protein folding
Phys. Rev. E 64 (2001) 041907
Yuguo Yu, Wei Wang, Jiafu Wang and Feng
Liu
Resonance-enhanced signal detection and
transduction in HH neuronal systems
Phys. Rev. E 63 (2001) 021907
Feng Liu, Yuguo Yu and Wei Wang
Signal-to-noise ratio gain in neuronal
systems
Phys. Rev. E 63 (2001) 051912
Feng Liu, Bambi Hu and Wei Wang
Effects of correlated and independent
noise on signal processing in neuronal
systems
Phys. Rev. E 63 (2001) 031907
Yuguo Yu, Feng Liu and Wei Wang
Spike timing precision for a neuronal
array with periosic signal
Phys. Lett. A 282 (2001) 23-30
Jianyong Wang, Jun Wang and Wei Wang,
Composition preference of amino acds in
model-proteins
Chin. Phys. Lett. 18 (2001)
449-451
Feng Liu and Wei Wang
Frequency sensitivity in nervous Systems
Chin. Phys. Lett. 18 (2001)
292-294
Yuguo Yu and Wei Wang,
Generation of spontaneous synchronized
rhythm and its role in information
processing
Chin. Phys. Lett. 18 (2001)
295-297
Yuguo Yu, Feng Liu and Wei Wang,
Frequency sensitivity in HH systems
Biol. Cybern. 84 (2001) 227-235
2000
Jun Wang and Wei Wang
Modeling study on the validity of
possibly simplified representation of
proteins
Phys. Rev. E 61 (2000) 6981-6
Wei Wang, Zhonghua Liu and Bambi Hu
Phase order in chaotic maps and in
coupled map lattice
Phys. Rev. Lett. 84 (2000)
2610-2613
Yi Tang and Wei Wang
Perturbation for the kink of the
sine-Gordon equation
Phys. Rev. E 62 (2000) 8842-8845
Guoce Zhuang and Wei Wang
Scaling behavior of 1D Pt chains
migration on Pt(110)-(1x2) surface
Phys. Lett. A 268 (2000) 413-417
Guoce Zhuang and Wei Wang
The atomic moving processes of cluster
Ir-18 diffusion on Ir(111)
Inter. J. Mod. Phys. B 14 (2000)
427-434
Guoce Zhuang and Wei Wang
Dynamic Scaling of surface growth in the
influence of small clusters mobility
Chin. Phys. Lett. 17 (2000)
285-287
Guoce Zhuang, Xiaobin Zhu and Wei Wang
Atomic aggregation processes in the
early stages of Pt/Pt(111) growth
Chin. Phys. Lett. 17 (2000)
589-591
Guoce Zhuang, Jiafu Wang, and Wei Wang
Scaling laws of reversible aggregation
in compact cluster system
Inter. J. Mod. Phys. B 14 (2000)
983-991
Jun Wang and Wei Wang,
Studies on the simplification of the
representation of proteins
Prog. in Phys. 20 (2000) 301-309
(in Chinese)
Yuqing Wang, Z.D. Wang and Wei Wang
Dynamical behavior of periodically
forced HR neuronal model
J. Phys. Soc Jpn 69 (2000)
276-283
Feng Liu, Yuguo Yu and Wei Wang
Information representation and its
application to stochastic resonance
J. Phys. Soc Jpn 69 (2000)
4107-4111
Jun Wang and Wei Wang
A computational approach to simplifying
the protein folding alphabet
Nature Structural Biology 6
(1999) 1033-1038
Zhongwen Xing, Jun Wang and Wei Wang
Effect of interaction energy fluctuation
on the folding of a proteinlike model
Phys. Rev. E 58 (1998) 3552-3556
Feng
Liu, Jiafu Wang and Wei Wang
Frequency sentitivity in weak signal
detection
Phys. Rev. E 59 (1999) 3453-3460
Wei Wang , Yuqing Wang and Z.D. Wang
Firing and signal transduction
associated with intrinsic oscillation in
neuronal systems
Phys. Rev. E 57 (1998) R2527-2530
Wei Wang and E. Canessa
Biharmonic pattern selection
Phys. Rev. E 47 (1993) 1243-1248
Wei Wang, Guang
Chen and Z. D. Wang
40-Hz coherent oscillations in neuronal
systems
Phys. Rev. E 56 (1997)3728–3731
Wei Wang, G. Perez and H. A. Cerdeira
Dynamical behavior of the firing in
coupled neuronal system
Phys. Rev. E 47 (1993) 2893-2898
Wei Wang
Effect of critical field on screened
dielectric breakdown growth
Phys. Rev. E 48 (1993) 476-479
H. El-Nashar, Wei Wang and H. A.
Cerdeira
Growth morphology for a ballistic
deposition model for multiple species
Phys. Rev. E 58 (1998) 4461-4467
Wei Wang and H. A. Cerdeira
Kinetic growth of randomlike and
ballisticlike deposition models
Phys. Rev. E 47 (1993) 3357-3361
Wei Wang and H. A. Cerdeira
Surface kinetic with diffusion of two
kinds of particles deposition models
Phys. Rev. E 52 (1995) 6308-6313
